Gene Detail

View functional annotation, sequence and genome location for gene PE_Scaf12285_0.4.

PE_Scaf12285_0.4

Species: Paraescarpia echinospica

NCBI Taxonomy ID: 2080241

Preferred name: -

Description: Galactose binding lectin domain

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Genome Location
  • Contig: Superscaffold1
  • Feature: gene
  • Coordinates: 85541882 - 85553735 (+)
  • Source file: Paraescarpia_echinospica.chr.gff3.gz

The bar shows the gene locus on the contig. It is an approximate visualization based on available GFF data.

Sequences
Protein Sequence
Paraescarpia_echinospica.chr.pep.fasta.gz (protein)
MTKAEYGRMSVGRCVKMTYGYLGCSAHVLPALDSLCSGRRSCSVRIPDQSLDATKPCPDEFKTYLNASYMCAKVQTKPCRKCYKLHYAHVRAERAYIASSVTTHNCGTITCPWRIELQPGQRVNITLFDFALTPKRNEQDICFRYAVIKEAKGPPRGTPVCRGRHREKQVYTSIGHLVEIHIVSPEVYNSNGQFLLYYQAVGCPDITKPENTWMRKEEGQVVVGCQSTGATWNLKCEGTTWHGEIGSCPLVQTGGDDPKGKVVSLPLGVLVAIVIGIALVIGVLILTVGIVFLKRQQQQYDTRQRQGTALYFRAPQEADLQEESAAETCTLPLKETCPAGPSGKQHRRHVRGSTTQQQQQQLLQQRENLYARRMKSRPLPSLPNLAAETDESPDCRVKVQTHRTNSGRKTGTRTGLGPGPGPSTSCDCPDPQYFELDPDELKASGCRAHARHAARAANARASSPSRRKGGGGHRQKSPEEENAENCDKEVHHNNSCSEIPLRLIRDSARPPVPRAEPAPANNYSWP*
CDS Sequence
Paraescarpia_echinospica.chr.CDS.fasta.gz (nucleotide)
ATGACGAAAGCGGAGTACGGCCGGATGAGTGTTGGTCGGTGCGTCAAGATGACCTACGGCTACCTGGGCTGTAGTGCCCACGTGCTGCCGGCCCTCGACTCTCTGTGTTCCGGCCGACGCTCCTGTAGTGTCCGCATCCCCGACCAGAGTCTCGACGCCACCAAGCCGTGTCCAGACGAGTTCAAGACGTACCTCAACGCCAGCTACATGTGTGCCAAAGTGCAAACGAAGCCGTGTCGGAAATGCTACAAGTTGCACTACGCCCACGTGCGAGCAGAACGCGCCTACATCGCGAGCAGTGTGACGACACACAACTGCGGTACCATCACGTGTCCTTGGAGGATAGAACTACAACCGGGTCAGCGGGTCAACATAACGCTGTTTGACTTCGCGCTTACGCCGAAACGCAACGAGCAGGACATCTGCTTCCGGTACGCCGTCATCAAGGAGGCGAAGGGTCCACCACGTGGTACTCCCGTGTGTAGGGGGCGGCACCGGGAGAAACAGGTGTACACCTCCATAGGACACCTCGTCGAGATACACATCGTCAGTCCGGAAGTGTACAATAGCAACGGCCAGTTTCTCCTCTACTACCAAGCGGTCGGGTGTCCGGATATCACGAAGCCAGAGAACACGTGGATGAGGAAGGAGGAGGGCCAAGTCGTTGTCGGCTGCCAGTCGACGGGGGCGACATGGAACCTCAAGTGTGAGGGAACCACGTGGCACGGCGAGATCGGCAGCTGTCCACTAGTTCAAACGGGAGGTGACGACCCCAAAGGCAAAGTTGTATCGCTTCCACTCGGTGTCCTCGTGGCCATCGTCATCGGCATTGCTCTCGTCATCGGCGTGCTCATTCTCACAGTCGGCATCGTCTTCTTAAAGAGGCAGCAGCAGCAGTATGACACACGCCAGCGCCAGGGGACGGCACTGTACTTCCGGGCGCCGCAGGAGGCCGACCTTCAGGAGGAGTCGGCCGCAGAGACGTGCACACTGCCGCTCAAAGAGACGTGTCCCGCCGGCCCGTCGGGCAAGCAGCACCGTCGACACGTCCGGGGCAGCACGACGCAGCAGCAGCAACAGCAGCTGCTGCAACAGCGGGAGAACCTGTACGCACGTCGCATGAAATCACGCCCGCTGCCGTCGCTGCCAAATCTCGCCGCCGAGACGGACGAGTCCCCGGACTGTCGCGTGAAGGTGCAGACGCACCGGACTAACTCCGGCCGCAAGACGGGCACCCGGACAGGTCTGGGACCAGGTCCGGGGCCGTCGACCTCGTGCGATTGCCCTGACCCGCAGTATTTCGAACTCGACCCGGACGAGCTGAAAGCAAGTGGGTGCCGGGCGCATGCGCGTCACGCAGCGCGCGCCGCTAATGCGCGTGCGTCGTCGCCGTCCCGCCGAAAGGGCGGGGGCGGTCATCGCCAGAAGTCCCCGGAGGAGGAGAACGCCGAGAACTGCGATAAGGAAGTGCACCATAATAACTCGTGCTCCGAGATCCCGTTAAGGCTCATACGAGACTCGGCGAGACCTCCGGTGCCGCGTGCCGAACCAGCGCCGGCCAATAACTACAGTTGGCCTTAG
Functional Annotation
Preferred name -
Description Galactose binding lectin domain
Seed ortholog 6412.HelroP189097
E-value 9.5e-22
Score 108.0
EggNOG OGs KOG4729@1|root,KOG4729@2759|Eukaryota,3A131@33154|Opisthokonta,3BQ3T@33208|Metazoa,3D745@33213|Bilateria
Max annotation level 2759|Eukaryota
COG category S
GOs -
EC number -
KEGG KO K04988
KEGG pathway -
KEGG module -
KEGG reaction -
KEGG RClass -
BRITE ko00000, ko04040
KEGG TC 1.A.5.1
CAZy -
BiGG reaction -
PFAMs GPS,Gal_Lectin,Lectin_C,PKD_channel,PLAT
InterProScan Annotation
Protein ID MD5 Length Analysis Signature Accession Signature Description Start End Score Status Date IPR Accession IPR Description GO Pathway
PE_Scaf12285_0.4 7f730b289e813a115e756cf039306d7a 526 SUPERFAMILY SSF49854 Spermadhesin, CUB domain 99 204 8.37E-8 T 03-02-2026 IPR035914 Spermadhesin, CUB domain superfamily - -
PE_Scaf12285_0.4 7f730b289e813a115e756cf039306d7a 526 MobiDBLite mobidb-lite consensus disorder prediction 336 360 - T 03-02-2026 - - - -
PE_Scaf12285_0.4 7f730b289e813a115e756cf039306d7a 526 MobiDBLite mobidb-lite consensus disorder prediction 455 464 - T 03-02-2026 - - - -
PE_Scaf12285_0.4 7f730b289e813a115e756cf039306d7a 526 MobiDBLite mobidb-lite consensus disorder prediction 453 526 - T 03-02-2026 - - - -
PE_Scaf12285_0.4 7f730b289e813a115e756cf039306d7a 526 MobiDBLite mobidb-lite consensus disorder prediction 375 431 - T 03-02-2026 - - - -
PE_Scaf12285_0.4 7f730b289e813a115e756cf039306d7a 526 MobiDBLite mobidb-lite consensus disorder prediction 465 475 - T 03-02-2026 - - - -
PE_Scaf12285_0.4 7f730b289e813a115e756cf039306d7a 526 CDD cd22823 Gal_Rha_Lectin 1 71 1.10145E-8 T 03-02-2026 - - - -
PE_Scaf12285_0.4 7f730b289e813a115e756cf039306d7a 526 Gene3D G3DSA:2.60.120.290 Spermadhesin, CUB domain 88 199 3.5E-6 T 03-02-2026 IPR035914 Spermadhesin, CUB domain superfamily - -
PE_Scaf12285_0.4 7f730b289e813a115e756cf039306d7a 526 Gene3D G3DSA:2.60.120.740 - 1 78 1.4E-8 T 03-02-2026 IPR043159 D-galactoside/L-rhamnose binding SUEL lectin domain superfamily - -
PE_Scaf12285_0.4 7f730b289e813a115e756cf039306d7a 526 PANTHER PTHR46780 PROTEIN EVA-1 1 495 5.9E-18 T 03-02-2026 - - - -
Genome Browser