Gene Detail

View functional annotation, sequence and genome location for gene PE_Scaf2065_4.5.

PE_Scaf2065_4.5

Species: Paraescarpia echinospica

NCBI Taxonomy ID: 2080241

Preferred name: -

Description: Poliovirus receptor-related protein

Genome Location
  • Contig: Superscaffold1
  • Feature: gene
  • Coordinates: 87765210 - 87785204 (+)
  • Source file: Paraescarpia_echinospica.chr.gff3.gz

The bar shows the gene locus on the contig. It is an approximate visualization based on available GFF data.

Sequences
Protein Sequence
Paraescarpia_echinospica.chr.pep.fasta.gz (protein)
MSALLDIVTLLLCFVAGFAYDIELSDGMVYVTKGSTAVLPCVVIGDGFDTGATSVTWAKYMVEDDKTGRHVSSASNVNTPFEETDRYTVLYKAGQLVYTLQITNAKLEDAGKYICEANEKKKTTFLYVVDPVKSVTIAGAKDTSENVTFNPTLLEYRTDRDGIFECVASGGNPKPNIALYIDGEKKNFVALFAPLKKVNKTMRGTNVGLKYFEYSMMRFSNSFKLQPKYDGKRLRCVGTVGHGVDDVEASVEVRVIGKPTLLPCNKTVWAPLATENFEIKCEFRSRPMYDSTTWNAETSGQSIENENSEGGLQAIVTTKNKHYEATLRIEVVTKESFQDYKFTVTNAEGSDTVTIKLERGKDVAEVSGAAVAHHVMALLFLAVSTAWIFH*
CDS Sequence
Paraescarpia_echinospica.chr.CDS.fasta.gz (nucleotide)
ATGTCGGCACTTCTAGATATTGTAACACTGTTGCTGTGTTTCGTCGCAGGTTTTGCCTACGACATCGAGCTCAGTGACGGGATGGTGTACGTTACTAAAGGATCGACGGCTGTGCTGCCCTGTGTTGTCATAGGCGACGGTTTCGACACTGGAGCTACATCTGTGACGTGGGCAAAGTACATGGTAGAGGACGACAAAACTGGAAGGCACGTGTCTTCAGCAAGTAATGTGAACACGCCATTCGAAGAAACTGACCGATATACTGTGTTGTACAAAGCGGGACAACTTGTCTATACATTACAAATCACAAACGCTAAATTGGAGGACGCCGGGAAATACATATGTGAAGCCAACGAAAAAAAGAAGACAACATTCTTATATGTTGTAGATCCCGTCAAGAGTGTGACCATTGCGGGTGCCAAAGATACATCAGAAAACGTAACATTTAATCCAACGTTGTTGGAGTATCGCACTGACCGCGACGGGATATTCGAATGCGTCGCCAGCGGAGGAAATCCTAAACCAAACATTGCGCTCTACATTGACGGCGAGAAGAAAAACTTTGTGGCTCTGTTCGCCCCACTCAAAAAGGTAAACAAAACGATGCGTGGCACCAACGTCGGTCTGAAGTACTTCGAATACTCCATGATGAGGTTCAGCAACTCGTTTAAACTGCAGCCTAAATATGACGGGAAACGTCTACGTTGTGTGGGCACAGTCGGGCACGGAGTCGATGACGTCGAGGCATCTGTGGAAGTACGCGTCATCGGAAAACCAACTTTACTGCCATGCAACAAAACCGTATGGGCACCACTTGCAACGGAAAACTTCGAAATCAAGTGCGAGTTTCGATCGAGGCCGATGTATGACTCAACAACGTGGAATGCCGAGACATCAGGTCAATCTATCGAGAATGAAAATTCTGAAGGCGGACTGCAGGCAATTGTCACAACTAAAAACAAACACTATGAAGCAACGTTGCGAATCGAAGTTGTGACAAAAGAGTCGTTCCAAGACTACAAATTTACAGTGACCAACGCTGAAGGATCGGACACCGTCACCATCAAATTGGAACGAGGCAAAGATGTTGCCGAAGTAAGCGGCGCCGCTGTCGCACACCACGTGATGGCGCTGCTCTTCCTTGCTGTCTCTACGGCTTGGATCTTCCATTAA
Functional Annotation
Preferred name -
Description Poliovirus receptor-related protein
Seed ortholog 303518.XP_005723682.1
E-value 7.8e-05
Score 53.1
EggNOG OGs 28Q44@1|root,2S16B@2759|Eukaryota,3A3QG@33154|Opisthokonta,3BRQ3@33208|Metazoa,3D90P@33213|Bilateria,48FEN@7711|Chordata,49CHK@7742|Vertebrata,4A4GV@7898|Actinopterygii
Max annotation level 2759|Eukaryota
COG category T
GOs -
EC number -
KEGG KO K06081, K06592, K06593
KEGG pathway MAP04514, MAP04520, MAP05168
KEGG module -
KEGG reaction -
KEGG RClass -
BRITE ko00000, ko00001, ko04090, ko04516
KEGG TC -
CAZy -
BiGG reaction -
PFAMs C2-set_2,I-set,Ig_3,V-set,ig
InterProScan Annotation
Protein ID MD5 Length Analysis Signature Accession Signature Description Start End Score Status Date IPR Accession IPR Description GO Pathway
PE_Scaf2065_4.5 4129b0ae7d381063c00f8fdf767e7973 390 Gene3D G3DSA:2.60.40.10 Immunoglobulins 146 260 3.6E-5 T 03-02-2026 IPR013783 Immunoglobulin-like fold - -
PE_Scaf2065_4.5 4129b0ae7d381063c00f8fdf767e7973 390 SMART SM00409 IG_3c 265 360 48.0 T 03-02-2026 IPR003599 Immunoglobulin domain subtype - -
PE_Scaf2065_4.5 4129b0ae7d381063c00f8fdf767e7973 390 SMART SM00409 IG_3c 26 129 4.8E-10 T 03-02-2026 IPR003599 Immunoglobulin domain subtype - -
PE_Scaf2065_4.5 4129b0ae7d381063c00f8fdf767e7973 390 SUPERFAMILY SSF48726 Immunoglobulin 150 357 3.16E-5 T 03-02-2026 IPR036179 Immunoglobulin-like domain superfamily - -
PE_Scaf2065_4.5 4129b0ae7d381063c00f8fdf767e7973 390 SUPERFAMILY SSF48726 Immunoglobulin 28 131 9.62E-14 T 03-02-2026 IPR036179 Immunoglobulin-like domain superfamily - -
PE_Scaf2065_4.5 4129b0ae7d381063c00f8fdf767e7973 390 PANTHER PTHR11640 NEPHRIN 24 261 3.3E-24 T 03-02-2026 IPR051275 Cellular adhesion and signaling domain-containing protein - -
PE_Scaf2065_4.5 4129b0ae7d381063c00f8fdf767e7973 390 Gene3D G3DSA:2.60.40.10 Immunoglobulins 265 358 7.2E-9 T 03-02-2026 IPR013783 Immunoglobulin-like fold - -
PE_Scaf2065_4.5 4129b0ae7d381063c00f8fdf767e7973 390 Pfam PF07686 Immunoglobulin V-set domain 30 124 4.2E-4 T 03-02-2026 IPR013106 Immunoglobulin V-set domain - -
PE_Scaf2065_4.5 4129b0ae7d381063c00f8fdf767e7973 390 Gene3D G3DSA:2.60.40.10 Immunoglobulins 23 133 6.4E-15 T 03-02-2026 IPR013783 Immunoglobulin-like fold - -
PE_Scaf2065_4.5 4129b0ae7d381063c00f8fdf767e7973 390 ProSiteProfiles PS50835 Ig-like domain profile. 31 125 9.264463 T 03-02-2026 IPR007110 Immunoglobulin-like domain - -
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