Gene Detail

View functional annotation, sequence and genome location for gene PE_Scaf3663_10.4.

PE_Scaf3663_10.4

Species: Paraescarpia echinospica

NCBI Taxonomy ID: 2080241

Preferred name: HCFC2

Description: release from viral latency

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Genome Location
  • Contig: Superscaffold1
  • Feature: gene
  • Coordinates: 9392798 - 9426280 (+)
  • Source file: Paraescarpia_echinospica.chr.gff3.gz

The bar shows the gene locus on the contig. It is an approximate visualization based on available GFF data.

Sequences
Protein Sequence
Paraescarpia_echinospica.chr.pep.fasta.gz (protein)
MAAPILKWKRITNTSGPCPRPRHGHRAVAIKDLMVVFGGGNEGIVDELHVFNTATSQWFVPAVRGDIPPGCAAYGFVCDGTRILVFGGMVEYGKYSNELYELQASRWEWKRLKPKPPKNNPPPCPRLGHSFTLLGNKVYLFGGLANESEDPKNNIPRYLNDLYTLELKPNSSTMLWDFPQTHGQAPPPRESHSCISYTSSTNNRHRLIIYGGMSGCRLGDLWQLEIDTMTWSKPVIQGIPPLPRSLHSATVIGNRMFVFGGWVPLVMDDVKVATHEKEWKCTNTLASLNLDTMTWEPLAMEVFEDALPRARAGHCSVAIHTRLYVWSGRDGYRKAWNNQVCFKDLWFLETEKPPSPSRVQLVRASTNTLEVCWGALPTADAYLLQLQKYDMPPSQALTPTTAPSTTPLAKAVPGIPQTTVVRPAGMTAVQHIRSLSGTTLPLTPTSQIRGATTRIVRQRSPIAVSSQAVKLVSAQPGSQPQIISIPAGAKSIGGITVVSAPNTGTATTSSGQMSGIAALAAAAAATQKINTTAGATTTPVSGIKVVTPTVVSSSAVKVTPVSGRTIGSTQSTPTIQTIRVGGPGTQTIRVGGPGTQTIRVGAPGTQTIRVGMPGTQTIRIGTPGTQTIRVGTPGTTILRGVGQSIAGQVARQVVTVQKSGQSTSQPQIVTLVKTTQGVAVSSVPKMAILSNKYSTGTVHTLGGQTVQMPRVALMPSKSGAGTVQTVTRQSLQGKVVPQGATIVKLVTTQTAGGIARPTTVMTTQASHHTPSTILGISSVQPQTATQQHMSSTVVKTLPSSMISIAKAGQMVGTAGKHTIVIAAPKSAVGGKVTTTSSLQKLSTGQGGTQFIVVTTRPSGSASTVGGNTISSLTSGGRPVTVRTVPMGTGMHGLTAAQILNAAGHVGGKQVIIVTTVSALHGALSSTVLNVRSPSVSSTLVTSVVTRPVSSAPLIISSVNRAAPVQAVTVKAADAEFVSETEQAVADMTAEHASLPMQVDGACDNDDSDSDVGLQVDGTSDPGDGDQQEEEQLQQQPEENQEAAMAMGESEAGAEEAEVANPPADTVQREVAAEIDAAPPMDATPSIDATPTMDVTLTMNSAPAVTTDPTAFLQTHDDTPQVTLAHMVTSAESVLTTEAAAALALALGEVEPKEEPADVATLSAQVAALVPEVAAPVTEAAPAMDATNADGIKMEDDSEKLAGIVPVMDVSGAANADLPHLTASVMVSNLPSLAPATAPSVNGIKPEPKKEVKTELPPMPVKTTAALAVTPGVKKEVNQWYDVGIIKGTSCVVSHYHLPSEAGQGNGDEAPPGLLQDIDVVSVPDHSVLKRQELLPGTAYKFRVAGINACGRGPFSEISAFKTCLPGFPGAPSAIKISKSPEGAHLSWEPPQNTAGRITEYSVYLAVRNAATQVEQKPGSPAQLAFVRVYCGPSPSCVVATPSLASAHIDYTTKPAIIFRIAARNEKGYGPATQVRWLQDASAAAAAAAASPAKTAVKRTVPMADSKAAGMVGGVKKLKTDAE*
CDS Sequence
Paraescarpia_echinospica.chr.CDS.fasta.gz (nucleotide)
ATGGCGGCACCCATACTGAAGTGGAAGCGGATAACAAACACATCTGGGCCGTGTCCCAGGCCTCGACATGGACATCGAGCAGTTGCAATCAAAGACTTAATGGTAGTGTTTGGTGGTGGCAACGAAGGCATTGTAGATGAGCTTCACGTTTTTAATACAGCTACGAGCCAGTGGTTTGTGCCTGCGGTGAGGGGGGATATACCACCAGGTTGTGCAGCATATGGATTTGTCTGCGATGGCACACGCATCCTTGTCTTCGGTGGCATGGTCGAGTATGGCAAATACTCTAATGAGTTGTACGAACTACAAGCGAGTCGGTGGGAATGGAAACGCCTCAAACCAAAACCACCAAAAAATAATCCACCGCCGTGTCCCAGACTGGGGCACAGTTTTACATTACTGGGAAACAAGGTTTACCTCTTTGGTGGATTGGCCAATGAGAGCGAAGATCCAAAGAACAATATTCCACGTTACCTGAACGACCTATACACACTGGAACTGAAGCCAAATAGCAGCACAATGTTGTGGGACTTCCCCCAGACCCACGGGCAGGCCCCTCCTCCCCGGGAGTCCCACTCCTGCATCTCCTACACCAGTAGTACAAACAACCGACACAGGCTCATCATTTACGGAGGCATGAGTGGCTGTCGTCTCGGCGACCTGTGGCAGCTCGAGATTGATACAATGACTTGGTCAAAACCAGTTATACAAGGGATTCCACCCCTACCCAGAAGCCTTCACTCTGCCACCGTCATCGGCAACAGGATGTTCGTGTTTGGCGGTTGGGTGCCACTTGTGATGGACGACGTTAAAGTGGCCACACACGAGAAAGAATGGAAATGTACAAACACTCTTGCCTCATTGAACCTCGACACAATGACGTGGGAGCCCCTCGCAATGGAGGTATTTGAGGACGCCCTGCCACGGGCGAGGGCGGGCCACTGCTCCGTGGCCATCCACACACGGCTCTACGTCTGGAGTGGCCGTGATGGGTACAGGAAGGCCTGGAACAACCAGGTGTGTTTCAAGGACCTGTGGTTCCTGGAGACTGAGAAGCCCCCCTCTCCGTCGCGTGTGCAGCTAGTACGTGCCAGCACCAACACCCTGGAGGTGTGCTGGGGCGCCCTGCCCACCGCCGACGCGTACTTGCTGCAGCTACAGAAGTACGACATGCCCCCCTCACAGGCCCTCACTCCCACCACCGCCCCCAGCACCACCCCCCTGGCCAAGGCTGTTCCCGGCATACCGCAGACCACTGTCGTACGACCAGCAGGTATGACCGCAGTCCAACACATCCGCAGCCTCTCTGGTACGACCCTGCCACTCACCCCGACAAGTCAAATCCGCGGTGCAACGACCCGCATTGTCCGGCAACGGTCACCCATCGCTGTGTCCTCCCAGGCGGTCAAGCTGGTCAGTGCCCAGCCCGGCTCACAGCCACAGATCATCAGCATTCCCGCCGGCGCCAAGTCGATCGGCGGAATCACAGTCGTGTCAGCACCAAACACTGGGACGGCGACAACGAGTAGTGGACAGATGAGCGGTATCGCTGCCCTGGCGGCCGCAGCAGCAGCTACACAGAAGATCAACACGACGGCCGGCGCAACAACCACCCCCGTGTCTGGTATCAAGGTCGTCACCCCAACGGTGGTCAGCTCATCCGCTGTCAAGGTCACTCCAGTCTCGGGAAGGACAATTGGATCCACCCAGTCGACTCCGACCATCCAGACCATCCGTGTTGGTGGTCCAGGCACACAGACCATCCGTGTTGGTGGTCCAGGCACACAGACCATCCGCGTCGGTGCACCCGGCACGCAGACTATCCGTGTTGGCATGCCCGGCACGCAGACCATCCGCATCGGCACACCCGGTACCCAGACAATCCGCGTCGGTACGCCCGGCACCACAATCCTGCGCGGTGTCGGTCAGTCGATCGCCGGTCAAGTGGCGCGACAAGTGGTCACTGTCCAGAAGAGTGGTCAGTCCACCAGCCAGCCACAGATTGTCACACTGGTCAAGACAACGCAGGGGGTTGCTGTGTCCTCGGTGCCAAAGATGGCTATACTCTCGAACAAATACTCGACGGGCACGGTTCACACACTTGGTGGACAGACTGTGCAGATGCCCCGGGTGGCATTAATGCCCAGTAAGTCTGGTGCGGGAACTGTCCAGACTGTGACAAGACAGTCTCTGCAGGGCAAGGTGGTGCCACAGGGAGCAACAATTGTCAAACTGGTGACGACGCAAACAGCAGGGGGCATTGCACGACCAACTACGGTCATGACGACCCAGGCGAGCCACCACACCCCCTCAACCATCCTTGGCATCAGCAGCGTACAACCTCAGACGGCCACACAACAACACATGAGTTCAACGGTTGTCAAGACTCTTCCGTCGTCCATGATCAGTATCGCGAAGGCCGGTCAGATGGTCGGTACTGCCGGCAAACATACCATTGTGATTGCTGCTCCAAAGAGTGCAGTAGGGGGAAAGGTGACGACAACATCAAGCTTGCAGAAACTATCGACAGGTCAGGGTGGAACACAGTTCATCGTCGTGACAACGCGTCCGAGTGGCAGTGCCAGCACTGTAGGGGGCAACACCATTTCCTCGCTCACTTCGGGAGGACGTCCAGTGACCGTAAGGACAGTGCCCATGGGCACTGGCATGCATGGACTGACCGCGGCCCAGATCCTCAATGCCGCTGGGCACGTCGGGGGCAAACAGGTCATCATAGTGACCACTGTCTCAGCGCTGCATGGAGCGCTGTCATCAACAGTGTTGAACGTGCGCAGTCCGTCCGTGTCATCGACGCTGGTGACGTCGGTGGTGACGCGTCCAGTGTCATCAGCACCTCTCATTATATCGTCGGTGAACCGCGCGGCGCCCGTTCAAGCCGTCACCGTGAAAGCAGCAGACGCAGAGTTTGTGTCGGAGACAGAACAAGCAGTGGCAGACATGACGGCCGAACACGCCTCGCTTCCGATGCAGGTAGATGGCGCTTGTGACAACGACGATTCAGACTCCGACGTTGGCCTGCAGGTAGATGGGACGAGTGACCCCGGAGACGGAGACCAGCAGGAAGAGGAGCAACTGCAACAGCAGCCTGAGGAAAACCAGGAGGCAGCCATGGCGATGGGTGAAAGCGAGGCCGGAGCCGAGGAAGCGGAGGTCGCGAACCCTCCGGCGGACACAGTGCAACGGGAAGTTGCAGCGGAGATCGATGCTGCACCACCCATGGATGCGACACCATCGATTGATGCGACACCAACAATGGACGTGACGCTGACAATGAACTCAGCGCCAGCTGTGACGACCGACCCGACAGCGTTCCTTCAGACGCACGACGACACACCGCAGGTGACACTTGCACACATGGTGACATCAGCAGAGTCAGTGCTGACGACGGAAGCTGCCGCGGCATTGGCGCTCGCACTCGGTGAGGTAGAGCCAAAGGAGGAGCCTGCCGATGTGGCAACACTGAGCGCACAGGTGGCAGCACTAGTCCCAGAGGTGGCAGCACCAGTCACGGAAGCAGCACCGGCCATGGATGCGACCAATGCTGACGGAATTAAGATGGAGGATGATTCAGAGAAGTTGGCGGGAATTGTTCCAGTGATGGATGTATCTGGCGCAGCCAATGCAGATCTCCCCCACTTGACTGCGTCAGTGATGGTTTCTAACTTGCCGAGTCTCGCTCCCGCCACTGCTCCCAGTGTGAACGGCATCAAACCTGAGCCAAAGAAGGAGGTGAAGACAGAACTACCGCCAATGCCCGTGAAGACGACGGCGGCACTAGCAGTGACACCTGGTGTGAAGAAGGAGGTGAATCAGTGGTATGACGTGGGCATCATCAAGGGAACGTCCTGCGTTGTGTCGCACTATCACCTACCGTCAGAGGCCGGTCAGGGAAACGGAGACGAGGCGCCACCTGGTCTCTTGCAGGACATCGACGTAGTTAGCGTGCCGGACCATAGCGTCCTCAAGCGACAGGAGCTGTTGCCTGGTACCGCATACAAGTTCCGCGTCGCCGGTATTAACGCTTGTGGCCGTGGGCCATTTAGCGAAATCTCTGCATTTAAAACGTGCCTTCCGGGCTTCCCTGGAGCGCCATCTGCCATCAAAATCAGCAAGAGTCCAGAGGGGGCGCACCTATCATGGGAACCGCCCCAGAACACGGCAGGGCGAATCACGGAGTACTCCGTGTACCTGGCGGTGCGTAATGCGGCCACGCAGGTGGAGCAGAAGCCAGGAAGTCCGGCGCAGCTCGCGTTTGTGCGTGTGTACTGCGGGCCTAGTCCGTCATGTGTCGTTGCGACGCCGAGTCTCGCGTCGGCCCACATCGACTACACAACGAAGCCGGCGATCATCTTCCGTATCGCTGCCCGCAATGAGAAGGGATATGGCCCGGCCACGCAAGTCAGGTGGCTCCAAGATGCCTCAGCAGCCGCAGCAGCAGCAGCAGCAAGCCCAGCAAAGACAGCAGTGAAGAGAACAGTGCCAATGGCCGACTCGAAGGCAGCTGGAATGGTCGGCGGTGTGAAAAAGCTGAAGACGGACGCCGAATAA
Functional Annotation
Preferred name HCFC2
Description release from viral latency
Seed ortholog 10224.XP_006821001.1
E-value 5.1e-311
Score 932.0
EggNOG OGs KOG3544@1|root,KOG4152@1|root,KOG3544@2759|Eukaryota,KOG4152@2759|Eukaryota,38FHQ@33154|Opisthokonta,3BD4X@33208|Metazoa,3CSXJ@33213|Bilateria
Max annotation level 2759|Eukaryota
COG category DK
GOs
GO:0000122, GO:0000123, GO:0000981, GO:0001205, GO:0001228, GO:0002119, GO:0002164, GO:0003674, GO:0003682, GO:0003700, GO:0003705, GO:0003712
GO:0000122, GO:0000123, GO:0000981, GO:0001205, GO:0001228, GO:0002119, GO:0002164, GO:0003674, GO:0003682, GO:0003700, GO:0003705, GO:0003712, GO:0003713, GO:0005488, GO:0005515, GO:0005575, GO:0005622, GO:0005623, GO:0005634, GO:0005654, GO:0005671, GO:0005737, GO:0005829, GO:0005886, GO:0006139, GO:0006325, GO:0006338, GO:0006351, GO:0006355, GO:0006357, GO:0006366, GO:0006464, GO:0006473, GO:0006475, GO:0006479, GO:0006508, GO:0006725, GO:0006807, GO:0006950, GO:0006979, GO:0006996, GO:0007005, GO:0007275, GO:0007346, GO:0007568, GO:0008104, GO:0008134, GO:0008150, GO:0008152, GO:0008213, GO:0008340, GO:0009058, GO:0009059, GO:0009791, GO:0009889, GO:0009890, GO:0009891, GO:0009892, GO:0009893, GO:0009987, GO:0010035, GO:0010038, GO:0010259, GO:0010467, GO:0010468, GO:0010556, GO:0010557, GO:0010558, GO:0010604, GO:0010605, GO:0010621, GO:0010628, GO:0010629, GO:0016020, GO:0016032, GO:0016043, GO:0016070, GO:0016569, GO:0016570, GO:0016571, GO:0016573, GO:0016579, GO:0018022, GO:0018130, GO:0018193, GO:0018205, GO:0018393, GO:0018394, GO:0019042, GO:0019045, GO:0019046, GO:0019219, GO:0019222, GO:0019438, GO:0019538, GO:0022611, GO:0030424, GO:0030425, GO:0030674, GO:0031248, GO:0031323, GO:0031324, GO:0031325, GO:0031326, GO:0031327, GO:0031328, GO:0031647, GO:0031974, GO:0031981, GO:0032259, GO:0032501, GO:0032502, GO:0032774, GO:0032991, GO:0033036, GO:0033613, GO:0034613, GO:0034641, GO:0034645, GO:0034654, GO:0034708, GO:0034968, GO:0035097, GO:0036211, GO:0036477, GO:0040008, GO:0040024, GO:0042221, GO:0042802, GO:0042995, GO:0043005, GO:0043025, GO:0043054, GO:0043170, GO:0043226, GO:0043227, GO:0043229, GO:0043231, GO:0043233, GO:0043254, GO:0043412, GO:0043414, GO:0043543, GO:0043966, GO:0043967, GO:0043981, GO:0043982, GO:0043984, GO:0044087, GO:0044237, GO:0044238, GO:0044249, GO:0044260, GO:0044267, GO:0044271, GO:0044297, GO:0044403, GO:0044419, GO:0044422, GO:0044424, GO:0044428, GO:0044444, GO:0044446, GO:0044451, GO:0044463, GO:0044464, GO:0044665, GO:0044666, GO:0045787, GO:0045892, GO:0045893, GO:0045927, GO:0045931, GO:0045934, GO:0045935, GO:0045944, GO:0046483, GO:0046686, GO:0048188, GO:0048518, GO:0048519, GO:0048522, GO:0048523, GO:0048856, GO:0050789, GO:0050794, GO:0050821, GO:0050896, GO:0051128, GO:0051171, GO:0051172, GO:0051173, GO:0051179, GO:0051252, GO:0051253, GO:0051254, GO:0051276, GO:0051568, GO:0051641, GO:0051704, GO:0051726, GO:0060090, GO:0060255, GO:0065007, GO:0065008, GO:0070013, GO:0070646, GO:0070647, GO:0070727, GO:0071339, GO:0071704, GO:0071840, GO:0071944, GO:0071981, GO:0080090, GO:0090304, GO:0097447, GO:0097458, GO:0097659, GO:0120025, GO:0120038, GO:0140110, GO:1901360, GO:1901362, GO:1901564, GO:1901576, GO:1902493, GO:1902494, GO:1902562, GO:1902679, GO:1902680, GO:1903506, GO:1903507, GO:1903508, GO:1990234, GO:2000112, GO:2000113, GO:2001141
EC number -
KEGG KO K14966
KEGG pathway MAP04212, MAP05168
KEGG module -
KEGG reaction -
KEGG RClass -
BRITE ko00000, ko00001, ko01009, ko03029, ko03036
KEGG TC -
CAZy -
BiGG reaction -
PFAMs Kelch_1,Kelch_3,Kelch_4,Kelch_5
InterProScan Annotation
Protein ID MD5 Length Analysis Signature Accession Signature Description Start End Score Status Date IPR Accession IPR Description GO Pathway
PE_Scaf3663_10.4 9f9a281b618b4654f4857fb9c3abbd8f 1522 Pfam PF13854 Host cell factor, Kelch-repeats domain 7 349 2.2E-195 T 03-02-2026 - - - -
PE_Scaf3663_10.4 9f9a281b618b4654f4857fb9c3abbd8f 1522 FunFam G3DSA:2.120.10.80:FF:000015 host cell factor 1 isoform X1 119 350 1.0E-128 T 03-02-2026 - - - -
PE_Scaf3663_10.4 9f9a281b618b4654f4857fb9c3abbd8f 1522 CDD cd00063 FN3 1333 1362 7.48785E-4 T 03-02-2026 IPR003961 Fibronectin type III - -
PE_Scaf3663_10.4 9f9a281b618b4654f4857fb9c3abbd8f 1522 MobiDBLite mobidb-lite consensus disorder prediction 1022 1031 - T 03-02-2026 - - - -
PE_Scaf3663_10.4 9f9a281b618b4654f4857fb9c3abbd8f 1522 MobiDBLite mobidb-lite consensus disorder prediction 997 1063 - T 03-02-2026 - - - -
PE_Scaf3663_10.4 9f9a281b618b4654f4857fb9c3abbd8f 1522 MobiDBLite mobidb-lite consensus disorder prediction 1032 1050 - T 03-02-2026 - - - -
PE_Scaf3663_10.4 9f9a281b618b4654f4857fb9c3abbd8f 1522 PANTHER PTHR46003 HOST CELL FACTOR 6 1105 0.0 T 03-02-2026 IPR043536 Host cell factor - -
PE_Scaf3663_10.4 9f9a281b618b4654f4857fb9c3abbd8f 1522 SMART SM00060 FN3_2 1257 1352 24.0 T 03-02-2026 IPR003961 Fibronectin type III - -
PE_Scaf3663_10.4 9f9a281b618b4654f4857fb9c3abbd8f 1522 SMART SM00060 FN3_2 1368 1469 0.068 T 03-02-2026 IPR003961 Fibronectin type III - -
PE_Scaf3663_10.4 9f9a281b618b4654f4857fb9c3abbd8f 1522 FunFam G3DSA:2.60.40.10:FF:000259 Host cell factor 1 (Predicted) 1366 1494 2.3E-59 T 03-02-2026 - - - -
PE_Scaf3663_10.4 9f9a281b618b4654f4857fb9c3abbd8f 1522 CDD cd00063 FN3 1368 1473 7.84092E-6 T 03-02-2026 IPR003961 Fibronectin type III - -
PE_Scaf3663_10.4 9f9a281b618b4654f4857fb9c3abbd8f 1522 Gene3D G3DSA:2.120.10.80 - 5 119 1.9E-18 T 03-02-2026 IPR015915 Kelch-type beta-propeller - -
PE_Scaf3663_10.4 9f9a281b618b4654f4857fb9c3abbd8f 1522 Gene3D G3DSA:2.60.40.10 Immunoglobulins 1271 1365 4.7E-26 T 03-02-2026 IPR013783 Immunoglobulin-like fold - -
PE_Scaf3663_10.4 9f9a281b618b4654f4857fb9c3abbd8f 1522 Gene3D G3DSA:2.60.40.10 Immunoglobulins 1366 1494 2.6E-58 T 03-02-2026 IPR013783 Immunoglobulin-like fold - -
PE_Scaf3663_10.4 9f9a281b618b4654f4857fb9c3abbd8f 1522 Gene3D G3DSA:6.10.250.2590 - 351 391 3.6E-25 T 03-02-2026 - - - -
PE_Scaf3663_10.4 9f9a281b618b4654f4857fb9c3abbd8f 1522 SUPERFAMILY SSF117281 Kelch motif 32 351 1.29E-51 T 03-02-2026 IPR015915 Kelch-type beta-propeller - -
PE_Scaf3663_10.4 9f9a281b618b4654f4857fb9c3abbd8f 1522 ProSiteProfiles PS50853 Fibronectin type-III domain profile. 1256 1365 9.475744 T 03-02-2026 IPR003961 Fibronectin type III - -
PE_Scaf3663_10.4 9f9a281b618b4654f4857fb9c3abbd8f 1522 FunFam G3DSA:2.120.10.80:FF:000008 host cell factor 1 isoform X1 3 118 7.7E-68 T 03-02-2026 - - - -
PE_Scaf3663_10.4 9f9a281b618b4654f4857fb9c3abbd8f 1522 SUPERFAMILY SSF49265 Fibronectin type III 1323 1478 3.23E-18 T 03-02-2026 IPR036116 Fibronectin type III superfamily - -
PE_Scaf3663_10.4 9f9a281b618b4654f4857fb9c3abbd8f 1522 Gene3D G3DSA:2.120.10.80 - 120 350 4.0E-38 T 03-02-2026 IPR015915 Kelch-type beta-propeller - -
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