Gene Detail

View functional annotation, sequence and genome location for gene PE_Scaf7657_0.3.

PE_Scaf7657_0.3

Species: Paraescarpia echinospica

NCBI Taxonomy ID: 2080241

Preferred name: SNED1

Description: sushi, nidogen and

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Genome Location
  • Contig: Superscaffold1
  • Feature: gene
  • Coordinates: 17125074 - 17133653 (-)
  • Source file: Paraescarpia_echinospica.chr.gff3.gz

The bar shows the gene locus on the contig. It is an approximate visualization based on available GFF data.

Sequences
Protein Sequence
Paraescarpia_echinospica.chr.pep.fasta.gz (protein)
MVNFVVYSLSVAFAVLTVSGQGIPAPPHLYPYGPETGDLMVPASDDGSEEVELSRPFPYFGEVRDKAWVGTNGIVSFIWDTVLLFGIPVAEECVIAPYAIDIDTRANDGRIYYRQTTNSQILGRATQDVRRSFSGASSFSAEWVLIASYNRVTYVGGNSSTPVATFQVVLITNGVQSFVMFNYGDVQFAKAPLDFEYAIMGLDKGDAKHYYLLPDHNKPSAEHIELTTNVGVLGRWLFRVDGNNTVSGGNHPEGVYDCENNSPCTAANRKLNKFFFTYVDMSRFVRCDNFGRCWIRPCALGTLFKASVGTCVQPWRI*
CDS Sequence
Paraescarpia_echinospica.chr.CDS.fasta.gz (nucleotide)
ATGGTTAACTTTGTCGTCTACTCGTTGTCGGTGGCGTTCGCCGTGCTCACTGTGTCGGGACAGGGCATCCCGGCGCCGCCACATCTCTATCCCTACGGCCCCGAGACGGGAGACTTAATGGTGCCGGCGTCCGACGACGGAAGTGAGGAAGTAGAACTCTCTCGTCCATTTCCATATTTCGGCGAAGTTCGCGACAAGGCTTGGGTTGGTACAAACGGCATCGTCTCCTTCATATGGGACACCGTGCTGCTCTTTGGAATCCCCGTGGCCGAAGAATGCGTAATTGCGCCTTACGCGATCGACATTGACACGAGAGCTAACGATGGTCGCATCTATTACAGACAAACAACAAATAGTCAAATTCTTGGACGAGCAACTCAGGACGTTAGACGGAGTTTTTCCGGTGCGTCTTCTTTTTCTGCTGAATGGGTATTAATCGCATCGTACAACCGGGTCACCTATGTCGGCGGCAACTCTTCAACTCCGGTAGCAACTTTCCAAGTCGTACTGATTACAAATGGTGTCCAGTCGTTCGTCATGTTCAACTACGGTGACGTGCAGTTTGCGAAGGCACCGCTTGACTTTGAATACGCAATAATGGGTCTGGACAAGGGTGATGCGAAACACTACTACCTCCTACCCGACCACAACAAGCCTTCTGCTGAACACATCGAGCTAACTACAAATGTGGGAGTGCTTGGTCGCTGGCTCTTCCGTGTCGATGGCAACAATACTGTTTCCGGTGGAAATCATCCTGAAGGCGTGTACGACTGCGAGAATAATTCCCCGTGTACAGCTGCCAACCGCAAATTGAACAAGTTCTTCTTCACATACGTTGACATGTCGAGGTTTGTGCGTTGCGATAACTTCGGCCGTTGCTGGATTCGACCGTGCGCGCTAGGCACTCTCTTCAAAGCCTCCGTAGGGACTTGCGTTCAGCCATGGCGTATCTAA
Functional Annotation
Preferred name SNED1
Description sushi, nidogen and
Seed ortholog 51337.XP_004667825.1
E-value 1.4e-47
Score 179.0
EggNOG OGs KOG1217@1|root,KOG4291@1|root,KOG1217@2759|Eukaryota,KOG4291@2759|Eukaryota,38HMU@33154|Opisthokonta,3BEFN@33208|Metazoa,3D26A@33213|Bilateria,48146@7711|Chordata,49557@7742|Vertebrata,3JDVB@40674|Mammalia,35A95@314146|Euarchontoglires,4Q3VF@9989|Rodentia
Max annotation level 2759|Eukaryota
COG category T
GOs -
EC number -
KEGG KO K02599
KEGG pathway MAP01522, MAP04320, MAP04330, MAP04658, MAP04919, MAP05020, MAP05165, MAP05200, MAP05206, MAP05224
KEGG module M00682
KEGG reaction -
KEGG RClass -
BRITE ko00000, ko00001, ko00002
KEGG TC -
CAZy -
BiGG reaction -
PFAMs EGF,NIDO,fn3,hEGF
InterProScan Annotation
Protein ID MD5 Length Analysis Signature Accession Signature Description Start End Score Status Date IPR Accession IPR Description GO Pathway
PE_Scaf7657_0.3 d628cc5f4dcc4036d6008e5ddf0221ee 317 Pfam PF06119 Nidogen-like 66 241 3.8E-39 T 03-02-2026 IPR003886 NIDO domain - -
PE_Scaf7657_0.3 d628cc5f4dcc4036d6008e5ddf0221ee 317 Gene3D G3DSA:2.170.140.10 Chitin binding domain 254 317 4.0E-5 T 03-02-2026 - - - -
PE_Scaf7657_0.3 d628cc5f4dcc4036d6008e5ddf0221ee 317 PANTHER PTHR13802 MUCIN 4-RELATED 30 250 9.0E-42 T 03-02-2026 IPR051495 Epithelial Barrier and Cell Signaling Protein - -
PE_Scaf7657_0.3 d628cc5f4dcc4036d6008e5ddf0221ee 317 SMART SM00539 ylk_9 97 245 1.4E-30 T 03-02-2026 IPR003886 NIDO domain - -
PE_Scaf7657_0.3 d628cc5f4dcc4036d6008e5ddf0221ee 317 ProSiteProfiles PS51220 NIDO domain profile. 97 243 25.735413 T 03-02-2026 IPR003886 NIDO domain - -
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