Platynereis dumerilii

Single-cell atlas for Platynereis dumerilii with cluster details and marker gene summary.

Dataset summary

Class Polychaeta
Order Phyllodocida
Family Nereididae
Species Platynereis dumerilii
Directory species-level single-cell directory
Tissue whole
Stage larva
Clusters 6
Cells 373
Type single-cell
Year 2018
Platform 10x Genomics
Study general biology
BioProject PRJEB22558
Journal Molecular Biology and Evolution
DOI 10.1093/molbev/msx336
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Cluster visualization

Interactive UMAP visualization of the single-cell dataset.

Dataset: whole larva 2018

Download Bar

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UMAP coordinates file.
Gene expression matrix.
Marker gene summary.

Marker genes by cluster

Gene p_val_adj
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Source: Markers.csv

Gene expression UMAP

Select a gene to display its expression across clusters.

Functional Annotation

View functional annotation details for the selected marker gene.

Click a gene in the marker table to load expression and functional annotation.